STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY72613.1Hypothetical protein. (475 aa)    
Predicted Functional Partners:
SDY72663.1
Putative membrane protein.
 
  
 0.995
SDY72638.1
L-amino acid N-acyltransferase YncA.
       0.795
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
       0.718
SDX86424.1
Penicillin-insensitive murein endopeptidase.
  
     0.650
SDY72679.1
Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family.
       0.556
SDY72547.1
Thioredoxin.
  
    0.555
SDY35937.1
Protein of unknown function.
  
     0.537
SDY85571.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.465
SDY08200.1
Cell division protein FtsB.
  
     0.462
SDY90159.1
Lysophospholipase.
  
     0.460
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.