STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY74012.1Pectate lyase superfamily protein. (763 aa)    
Predicted Functional Partners:
SDY00513.1
Hint domain-containing protein.
 
 0.886
SDY66982.1
Hint domain-containing protein.
 
 0.852
SDX86915.1
acyl-CoA thioesterase-1.
  
 0.802
SDY67959.1
Glycosyl transferase family 2.
  
     0.760
SDY67945.1
Core-2/I-Branching enzyme.
  
     0.757
SDY67981.1
Glycosyl transferase family 2.
  
     0.756
SDY41568.1
Hypothetical protein.
  
     0.750
SDY50132.1
Core-2/I-Branching enzyme.
  
     0.749
SDY67926.1
LPS sulfotransferase NodH.
  
     0.749
SDX99699.1
Hypothetical protein.
  
     0.747
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.