STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY76212.1Prepilin peptidase CpaA. (164 aa)    
Predicted Functional Partners:
SDY76389.1
Pilus assembly protein CpaB.
 
  
 0.973
SDY76226.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
   
 0.967
SDY76331.1
Pilus assembly protein CpaE.
 
  
 0.961
SDY76288.1
Tight adherence protein B.
 
  
 0.959
SDY76249.1
Tetratricopeptide repeat-containing protein.
 
   
 0.956
SDY76184.1
Hypothetical protein.
 
     0.904
SDY76368.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.899
SDY76426.1
Hypothetical protein.
 
  
 0.898
SDY76269.1
Tight adherence protein C.
 
   
 0.867
SDY76349.1
Outer membrane protein OmpA.
 
     0.823
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.