STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY83817.1Protein of unknown function. (438 aa)    
Predicted Functional Partners:
SDY08307.1
Phage conserved hypothetical protein BR0599.
 
 
   0.962
SDY08328.1
TIGR02217 family protein.
 
 
   0.962
SDY08416.1
Phage major tail protein, TP901-1 family.
 
 
   0.948
SDY08564.1
Phage portal protein, HK97 family.
 
 
 
 0.868
SDY27546.1
Beta-glucosidase.
   
   0.867
SDY08264.1
Putative phage tail protein.
 
 
   0.842
SDY08496.1
Phage major capsid protein, HK97 family.
 
 
 
 0.828
SDY08481.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
 
   0.820
SDY08441.1
Protein of unknown function.
 
 
   0.806
SDY18262.1
Phage major capsid protein, HK97 family.
 
 
 
 0.802
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.