STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY85571.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (237 aa)    
Predicted Functional Partners:
SDX88216.1
L,D-transpeptidase catalytic domain.
 
  
 0.630
SDY86846.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
  
     0.582
SDY72613.1
Hypothetical protein.
  
     0.465
SDX86424.1
Penicillin-insensitive murein endopeptidase.
  
     0.451
SDY02322.1
Invasion protein IalB, involved in pathogenesis.
  
     0.437
SDY89823.1
Two-component system, OmpR family, sensor histidine kinase QseC.
  
     0.424
SDY72663.1
Putative membrane protein.
  
     0.407
Your Current Organism:
Citreimonas salinaria
NCBI taxonomy Id: 321339
Other names: C. salinaria, Citreimonas salinaria Choi and Cho 2006, DSM 26880, JCM 13036, KCCM 42116, Rhodobacteraceae bacterium CL-SP20, strain CL-SP20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.