Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CACTINCactin, spliceosome C complex subunit. (784 aa)    
Predicted Functional Partners:
CXorf56
Chromosome unknown CXorf56 homolog.
    
 0.991
FAM32A
Family with sequence similarity 32 member A.
    
 0.991
SLU7
SLU7 homolog, splicing factor.
    
 0.989
DHX8
DEAH-box helicase 8.
    
 0.989
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.985
CDC40
Cell division cycle 40.
    
 0.984
PPIL1
Peptidylprolyl isomerase like 1.
    
  0.980
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
    
  0.978
ENSLCOP00000000141
annotation not available
    
 0.976
CCDC12
Coiled-coil domain containing 12.
   
  0.976
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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