ENSLCOP00000002992 protein (Lepidothrix coronata)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLCOP00000002992

annotation not available (1425 aa)

Predicted Functional Partners:

ARID4B

0.808

ARID4A

0.808

USH1G

0.789

WHRN

0.783

USH1C

0.769

ANKS4B

0.749

ENSLCOP00000018700

0.741

NEO1

0.675

IGDCC4

0.618

CALM1

0.618

Your Current Organism:

Lepidothrix coronata

NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKS4B	ENSLCOP00000002992	ENSLCOP00000003082	ENSLCOP00000002992	Ankyrin repeat and sterile alpha motif domain containing 4B.	annotation not available	0.749
ANKS4B	ENSLCOP00000018700	ENSLCOP00000003082	ENSLCOP00000018700	Ankyrin repeat and sterile alpha motif domain containing 4B.	annotation not available	0.749
ANKS4B	USH1C	ENSLCOP00000003082	ENSLCOP00000019659	Ankyrin repeat and sterile alpha motif domain containing 4B.	USH1 protein network component harmonin.	0.981
ANKS4B	WHRN	ENSLCOP00000003082	ENSLCOP00000020653	Ankyrin repeat and sterile alpha motif domain containing 4B.	Whirlin.	0.553
ARID4A	ARID4B	ENSLCOP00000009751	ENSLCOP00000009572	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.705
ARID4A	ENSLCOP00000002992	ENSLCOP00000009751	ENSLCOP00000002992	AT-rich interaction domain 4A.	annotation not available	0.808
ARID4A	ENSLCOP00000018700	ENSLCOP00000009751	ENSLCOP00000018700	AT-rich interaction domain 4A.	annotation not available	0.808
ARID4B	ARID4A	ENSLCOP00000009572	ENSLCOP00000009751	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.705
ARID4B	ENSLCOP00000002992	ENSLCOP00000009572	ENSLCOP00000002992	AT-rich interaction domain 4B.	annotation not available	0.808
ARID4B	ENSLCOP00000018700	ENSLCOP00000009572	ENSLCOP00000018700	AT-rich interaction domain 4B.	annotation not available	0.808
ARID4B	USH1C	ENSLCOP00000009572	ENSLCOP00000019659	AT-rich interaction domain 4B.	USH1 protein network component harmonin.	0.595
CALM1	ENSLCOP00000002992	ENSLCOP00000013966	ENSLCOP00000002992	Calmodulin 1.	annotation not available	0.618
CALM1	ENSLCOP00000018700	ENSLCOP00000013966	ENSLCOP00000018700	Calmodulin 1.	annotation not available	0.618
ENSLCOP00000002992	ANKS4B	ENSLCOP00000002992	ENSLCOP00000003082	annotation not available	Ankyrin repeat and sterile alpha motif domain containing 4B.	0.749
ENSLCOP00000002992	ARID4A	ENSLCOP00000002992	ENSLCOP00000009751	annotation not available	AT-rich interaction domain 4A.	0.808
ENSLCOP00000002992	ARID4B	ENSLCOP00000002992	ENSLCOP00000009572	annotation not available	AT-rich interaction domain 4B.	0.808
ENSLCOP00000002992	CALM1	ENSLCOP00000002992	ENSLCOP00000013966	annotation not available	Calmodulin 1.	0.618
ENSLCOP00000002992	ENSLCOP00000018700	ENSLCOP00000002992	ENSLCOP00000018700	annotation not available	annotation not available	0.741
ENSLCOP00000002992	IGDCC4	ENSLCOP00000002992	ENSLCOP00000006538	annotation not available	Immunoglobulin superfamily DCC subclass member 4.	0.618
ENSLCOP00000002992	NEO1	ENSLCOP00000002992	ENSLCOP00000021938	annotation not available	Neogenin 1.	0.675