STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108492924Uncharacterized LOC108492924. (568 aa)    
Predicted Functional Partners:
CYB5R4
Cytochrome b5 reductase 4.
    
  0.694
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
   
 0.662
AGXT
Alanine--glyoxylate and serine--pyruvate aminotransferase.
  
 
 0.546
TK1
Thymidine kinase 1.
    
 0.531
SUOX
Sulfite oxidase.
     
 0.529
OAT
Ornithine aminotransferase.
  
 
 0.523
CSTF3
Cleavage stimulation factor subunit 3.
    
 0.517
TYMS
Thymidylate synthetase.
    
  0.507
DDC
Dopa decarboxylase.
  
 
  0.461
HDC
Histidine decarboxylase.
  
 
  0.461
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.