STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCBE1Collagen and calcium binding EGF domains 1. (398 aa)    
Predicted Functional Partners:
VEGFC
Vascular endothelial growth factor C.
    
 0.676
LOC108503538
Tumor necrosis factor receptor superfamily member 13C-like.
    
 0.608
TNFRSF17
TNF receptor superfamily member 17.
    
 0.607
C8B
Complement C8 beta chain.
   
 0.603
ENSLCOP00000011930
annotation not available
    
 0.586
TNFRSF13B
TNF receptor superfamily member 13B.
    
 0.566
C7
Complement C7.
   
  0.565
VEGFD
Vascular endothelial growth factor D.
    
 0.551
PHF5A
PHD finger protein 5A.
      
 0.544
SUCLG2
succinate-CoA ligase GDP-forming beta subunit.
      
 0.532
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.