STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRF1Nuclear respiratory factor 1. (482 aa)    
Predicted Functional Partners:
PPARGC1A
PPARG coactivator 1 alpha.
   
 0.890
RBM22
RNA binding motif protein 22.
   
 0.833
PPARGC1B
PPARG coactivator 1 beta.
     
 0.808
TFAM
Transcription factor A, mitochondrial.
     
 0.659
SIRT1
Sirtuin 1.
    
 
 0.584
SIRT7
Sirtuin 7.
    
 
 0.506
GABPA
GA binding protein transcription factor subunit alpha.
     
 0.501
CYCS
Cytochrome c.
     
 0.485
ENSLCOP00000023220
annotation not available
     
 0.485
NFE2L2
Nuclear factor, erythroid 2 like 2.
    
 
 0.452
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.