STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DBX1Developing brain homeobox 1. (342 aa)    
Predicted Functional Partners:
LHX9
LIM homeobox 9.
    
 
 0.663
TAL2
TAL bHLH transcription factor 2.
      
 0.491
LHX5
LIM homeobox 5.
   
 
 0.475
LHX8
LIM homeobox 8.
    
 
 0.432
LHX6
LIM homeobox 6.
    
 
 0.432
ATOH1
Atonal bHLH transcription factor 1.
      
 0.422
LMO3
LIM domain only 3.
    
 
 0.418
LMO1
LIM domain only 1.
    
 
 0.418
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.