STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHLD1Shieldin complex subunit 1. (227 aa)    
Predicted Functional Partners:
SHLD2
Shieldin complex subunit 2.
    
 
 0.655
MAD2L2
Mitotic arrest deficient 2 like 2.
    
 
 0.655
TATDN3
TatD DNase domain containing 3.
      
 0.534
OTOL1
Otolin 1.
      
 0.521
BEND7
BEN domain containing 7.
      
 0.509
KATNAL2
Katanin catalytic subunit A1 like 2.
      
 0.502
RPS6KC1
Ribosomal protein S6 kinase C1.
      
 0.501
LYPD6B
LY6/PLAUR domain containing 6B.
      
 0.468
TP53BP1
Tumor protein p53 binding protein 1.
    
 
 0.407
GPCPD1
Glycerophosphocholine phosphodiesterase 1.
      
 0.403
Your Current Organism:
Lepidothrix coronata
NCBI taxonomy Id: 321398
Other names: L. coronata, Pipra coronata, blue-crowned manakin
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.