STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RRP3ATP-dependent rRNA helicase RRP3; ATP-dependent rRNA helicase required for pre-ribosomal RNA processing. Involved in the maturation of the 35S-pre-rRNA and to its cleavage to mature 18S rRNA. (546 aa)    
Predicted Functional Partners:
SNOG_06761
Sas10 domain-containing protein.
   
  0.999
SNOG_07810
WD_REPEATS_REGION domain-containing protein.
   
 0.992
SNOG_03110
Uncharacterized protein.
   
 0.992
SNOG_10281
Uncharacterized protein.
  
 0.988
SNOG_07029
KH_8 domain-containing protein.
   
 0.987
SNOG_13952
NUC153 domain-containing protein.
   
 
 0.985
SNOG_04672
Uncharacterized protein.
   
 0.983
SNOG_15860
Uncharacterized protein.
   
 0.979
UTP25
U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.
   
 
 0.979
SNOG_02569
WD_REPEATS_REGION domain-containing protein.
   
 0.979
Your Current Organism:
Parastagonospora nodorum
NCBI taxonomy Id: 321614
Other names: P. nodorum SN15, Parastagonospora nodorum SN15, Phaeosphaeria nodorum SN15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.