STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL62090.1Sporulation integral membrane protein YtvI. (339 aa)    
Predicted Functional Partners:
SDL62043.1
Succinyl-diaminopimelate desuccinylase.
       0.618
SDL62125.1
Trehalose/maltose transport system substrate-binding protein.
 
     0.498
SDL61066.1
Regulator of sigma E protease.
 
     0.447
SDL61936.1
Glycerol-3-phosphate dehydrogenase.
  
    0.423
SDL61974.1
Thioredoxin reductase.
       0.420
SDL62009.1
CxxC motif-containing protein.
       0.419
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.402
Your Current Organism:
Halarsenatibacter silvermanii
NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.