Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDL33082.1 | SDL49734.1 | SAMN04488692_103151 | SAMN04488692_10533 | Tetratricopeptide repeat-containing protein. | Acetoin utilization deacetylase AcuC. | 0.806 |
SDL33082.1 | SDL67499.1 | SAMN04488692_103151 | SAMN04488692_10762 | Tetratricopeptide repeat-containing protein. | Flagellar operon protein TIGR03826. | 0.972 |
SDL33082.1 | SDL79454.1 | SAMN04488692_103151 | SAMN04488692_10954 | Tetratricopeptide repeat-containing protein. | Ankyrin repeat. | 0.978 |
SDL33082.1 | SDM09933.1 | SAMN04488692_103151 | SAMN04488692_11669 | Tetratricopeptide repeat-containing protein. | Tetratricopeptide repeat-containing protein. | 0.643 |
SDL33082.1 | alaS | SAMN04488692_103151 | SAMN04488692_104148 | Tetratricopeptide repeat-containing protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.974 |
SDL33082.1 | rpoZ | SAMN04488692_103151 | SAMN04488692_10415 | Tetratricopeptide repeat-containing protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.941 |
SDL49734.1 | SDL33082.1 | SAMN04488692_10533 | SAMN04488692_103151 | Acetoin utilization deacetylase AcuC. | Tetratricopeptide repeat-containing protein. | 0.806 |
SDL49734.1 | SDL67499.1 | SAMN04488692_10533 | SAMN04488692_10762 | Acetoin utilization deacetylase AcuC. | Flagellar operon protein TIGR03826. | 0.959 |
SDL49734.1 | SDL79454.1 | SAMN04488692_10533 | SAMN04488692_10954 | Acetoin utilization deacetylase AcuC. | Ankyrin repeat. | 0.797 |
SDL49734.1 | SDM09933.1 | SAMN04488692_10533 | SAMN04488692_11669 | Acetoin utilization deacetylase AcuC. | Tetratricopeptide repeat-containing protein. | 0.806 |
SDL49734.1 | rplF | SAMN04488692_10533 | SAMN04488692_11018 | Acetoin utilization deacetylase AcuC. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.786 |
SDL67499.1 | SDL33082.1 | SAMN04488692_10762 | SAMN04488692_103151 | Flagellar operon protein TIGR03826. | Tetratricopeptide repeat-containing protein. | 0.972 |
SDL67499.1 | SDL49734.1 | SAMN04488692_10762 | SAMN04488692_10533 | Flagellar operon protein TIGR03826. | Acetoin utilization deacetylase AcuC. | 0.959 |
SDL67499.1 | SDL67540.1 | SAMN04488692_10762 | SAMN04488692_10763 | Flagellar operon protein TIGR03826. | Anti-sigma-28 factor, FlgM family. | 0.941 |
SDL67499.1 | SDL67579.1 | SAMN04488692_10762 | SAMN04488692_10764 | Flagellar operon protein TIGR03826. | FlgN protein. | 0.963 |
SDL67499.1 | SDL79454.1 | SAMN04488692_10762 | SAMN04488692_10954 | Flagellar operon protein TIGR03826. | Ankyrin repeat. | 0.969 |
SDL67499.1 | SDM09933.1 | SAMN04488692_10762 | SAMN04488692_11669 | Flagellar operon protein TIGR03826. | Tetratricopeptide repeat-containing protein. | 0.974 |
SDL67499.1 | alaS | SAMN04488692_10762 | SAMN04488692_104148 | Flagellar operon protein TIGR03826. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.981 |
SDL67499.1 | gpmI | SAMN04488692_10762 | SAMN04488692_12317 | Flagellar operon protein TIGR03826. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.968 |
SDL67499.1 | rplF | SAMN04488692_10762 | SAMN04488692_11018 | Flagellar operon protein TIGR03826. | Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.911 |
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