STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL65404.1Putative ABC transport system permease protein. (412 aa)    
Predicted Functional Partners:
SDL65374.1
Putative ABC transport system ATP-binding protein.
 
 0.998
SDL65487.1
Hypothetical protein.
 
     0.872
SDL65453.1
Putative ABC transport system permease protein.
 
    
0.836
SDL16480.1
Autotransporter translocation and assembly factor TamB.
 
     0.556
SDL16439.1
Beta-barrel assembly machine subunit BamA.
 
   
 0.549
SDL10608.1
Hypothetical protein.
  
  
 0.500
SDL92066.1
Biopolymer transport protein ExbB.
 
    0.499
SDL65342.1
N-acetylglucosamine 6-phosphate deacetylase.
       0.480
SDL15707.1
Protein of unknown function.
 
     0.422
SDL09914.1
Zinc transport system ATP-binding protein.
 
 
 0.415
Your Current Organism:
Halarsenatibacter silvermanii
NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.