STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM02964.1Oxaloacetate decarboxylase, beta subunit; Tunnel subunit of the primary sodium pump glutaconyl-CoA decarboxylase (GCD). (376 aa)    
Predicted Functional Partners:
SDM02993.1
Biotin-requiring enzyme.
 
 
 0.951
SDM33579.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.894
SDL21630.1
Biotin carboxyl carrier protein.
 
  
  0.765
SDL86200.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.742
SDM03066.1
Acetyl-CoA carboxylase, carboxyltransferase component.
  
 
 0.679
SDL60109.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.629
SDM23077.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
    
 0.589
SDM31392.1
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
     
 0.565
SDL33219.1
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.551
SDL17785.1
enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.540
Your Current Organism:
Halarsenatibacter silvermanii
NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1
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