STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM18146.1PAS domain S-box-containing protein. (835 aa)    
Predicted Functional Partners:
SDL27632.1
Signal transduction histidine kinase.
 0.981
SDL27706.1
Response regulator receiver domain-containing protein.
 
 0.981
SDM24524.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 0.963
SDL27840.1
Signal transduction histidine kinase.
 0.958
SDM54003.1
PAS domain S-box-containing protein.
 
 0.940
SDM29093.1
PAS domain S-box-containing protein.
0.932
SDM24622.1
Hypothetical protein.
  
 0.927
SDM44390.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.900
SDM18287.1
PAS domain S-box-containing protein.
 
 0.886
SDL14967.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
   
0.868
Your Current Organism:
Halarsenatibacter silvermanii
NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1
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