STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM27812.1Integrase/recombinase XerD. (196 aa)    
Predicted Functional Partners:
SDM33579.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.602
SDL75176.1
comF family protein.
   
    0.478
hslV
ATP-dependent HslUV protease, peptidase subunit HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
  
    0.441
SDL93738.1
Prephenate dehydrogenase.
  
    0.410
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.402
SDM35070.1
Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family.
   
    0.402
Your Current Organism:
Halarsenatibacter silvermanii
NCBI taxonomy Id: 321763
Other names: DSM 21684, H. silvermanii, Halanaerobiaceae bacterium SLAS-1, Halarsenatibacter silvermanii Switzer Blum et al. 2010, strain SLAS-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.