STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_030845Uncharacterized protein. (414 aa)    
Predicted Functional Partners:
PHYPA_022289
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.989
PHYPA_018757
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.989
PHYPA_028395
GLUE N-terminal domain-containing protein.
    
 0.987
PHYPA_022984
Predicted protein.
    
 0.985
PHYPA_022525
VPS37 C-terminal domain-containing protein.
    
 0.979
PHYPA_018974
VPS37 C-terminal domain-containing protein.
    
 0.979
PHYPA_002002
VPS37 C-terminal domain-containing protein.
    
 0.979
PHYPA_001882
VPS37 C-terminal domain-containing protein.
    
 0.979
PHYPA_020661
FYVE-type domain-containing protein.
    
 0.970
PHYPA_004952
Ubiquitin-like domain-containing protein.
    
 0.959
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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