STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_029579Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (385 aa)    
Predicted Functional Partners:
PpKO
Ent-kaurene oxidase; Belongs to the cytochrome P450 family.
      
 0.664
PHYPA_013610
Uncharacterized protein.
     
 0.511
PHYPA_021864
Predicted protein.
   
 
 0.493
PHYPA_010766
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
  
 0.472
PHYPA_005661
Predicted protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
  
 0.472
PHYPA_008081
Uncharacterized protein.
      
 0.469
PHYPA_005311
Uncharacterized protein.
      
 0.469
PHYPA_009008
Predicted protein; Belongs to the cytochrome P450 family.
      
 0.465
PHYPA_008876
Diphosphomevalonate decarboxylase.
      
 0.461
PHYPA_008204
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
      
 0.461
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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