STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_028029Uncharacterized protein. (299 aa)    
Predicted Functional Partners:
PHYPA_025430
Predicted protein.
  
  
 
0.901
PHYPA_018859
DHFR domain-containing protein.
   
 
 0.794
PHYPA_018519
2Fe-2S ferredoxin-type domain-containing protein.
   
 0.679
PHYPA_013610
Uncharacterized protein.
  
 0.624
PHYPA_016756
Chromo domain-containing protein.
  
 0.597
PHYPA_006683
Uncharacterized protein.
  
 0.574
PHYPA_018045
TPR_REGION domain-containing protein.
    
 0.564
PHYPA_030762
Predicted protein.
  
 0.551
PHYPA_017801
Predicted protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 0.532
PHYPA_018534
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.525
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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