Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_026299PNPLA domain-containing protein. (1226 aa)    
Predicted Functional Partners:
PHYPA_002973
Uncharacterized protein.
     
 0.942
PHYPA_028885
Uncharacterized protein.
     
 0.940
PHYPA_021430
Uncharacterized protein.
     
 0.940
PHYPA_026421
Uncharacterized protein.
     
 0.937
PHYPA_010976
Uncharacterized protein.
     
 0.937
PHYPA_005386
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
    
 0.930
PHYPA_022886
Lipase; Belongs to the AB hydrolase superfamily. Lipase family.
    
 0.930
PHYPA_002992
1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
    
 0.919
PHYPA_009717
Predicted protein.
    
 0.915
PHYPA_015609
Predicted protein.
    
 0.915
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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