STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_024882Uncharacterized protein. (351 aa)    
Predicted Functional Partners:
PHYPA_011008
SSD domain-containing protein.
   
 0.942
PHYPA_005700
SSD domain-containing protein.
   
 0.942
PHYPA_006811
Uncharacterized protein.
    
 
 0.774
PHYPA_009865
Pectin acetylesterase; Hydrolyzes acetyl esters in homogalacturonan regions of pectin. In type I primary cell wall, galacturonic acid residues of pectin can be acetylated at the O-2 and O-3 positions. Decreasing the degree of acetylation of pectin gels in vitro alters their physical properties; Belongs to the pectinacetylesterase family.
     
 0.717
PHYPA_002337
PRKCSH domain-containing protein.
    
  0.630
PHYPA_001262
PRKCSH domain-containing protein.
    
  0.630
PHYPA_016090
Uncharacterized protein.
   
 0.622
PHYPA_014516
Uncharacterized protein.
   
 0.622
PHYPA_003778
Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.
   
 0.622
PHYPA_022517
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
    
  0.541
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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