STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_023202Beta-hexosaminidase. (599 aa)    
Predicted Functional Partners:
PHYPA_020293
Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.
    
 0.964
PHYPA_008236
Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.
    
 0.963
PHYPA_022978
Alpha-galactosidase.
   
 
 0.940
PHYPA_015366
Uncharacterized protein.
    
 0.940
PHYPA_022578
Predicted protein.
    
 0.940
PHYPA_030117
Beta-galactosidase.
  
 
 0.937
PHYPA_017071
Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family.
  
 
 0.937
PHYPA_016309
Beta-hexosaminidase.
  
  
0.911
PHYPA_029092
Chitin-binding type-1 domain-containing protein.
     
  0.900
PHYPA_020929
Chitin-binding type-1 domain-containing protein.
     
  0.900
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.