STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020387DUF2052 domain-containing protein. (339 aa)    
Predicted Functional Partners:
PHYPA_029458
Splicing factor subunit; Belongs to the SF3B5 family.
    
 
 0.913
PHYPA_017893
Uncharacterized protein.
    
 
 0.899
PHYPA_000715
Predicted protein.
    
 
 0.899
PHYPA_011504
Uncharacterized protein.
    
 
 0.871
PHYPA_015021
Predicted protein.
    
 
 0.871
PHYPA_029291
CPSF_A domain-containing protein.
    
 
 0.779
PHYPA_016126
CPSF_A domain-containing protein.
    
 
 0.779
PHYPA_005800
CPSF_A domain-containing protein.
    
 
 0.779
PHYPA_021095
Predicted protein.
    
 
 0.779
PHYPA_007974
Predicted protein.
   
 
 0.653
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.