STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020643RING-type domain-containing protein. (450 aa)    
Predicted Functional Partners:
PHYPA_029465
RING-type domain-containing protein.
  
 
0.974
PHYPA_020426
Predicted protein.
  
 
0.974
PHYPA_008508
Uncharacterized protein.
    
 0.956
PHYPA_008202
Uncharacterized protein.
    
 0.956
PHYPA_012226
JmjC domain-containing protein.
    
 
 0.952
PHYPA_028487
WD_REPEATS_REGION domain-containing protein.
    
 0.852
PpCLF
Polycomb group protein.
    
 0.844
PHYPA_012373
Chromo domain-containing protein.
    
 0.803
PHYPA_016756
Chromo domain-containing protein.
    
 0.799
PHYPA_003410
E2F_TDP domain-containing protein.
    
 0.798
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.