STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020750Uncharacterized protein. (1224 aa)    
Predicted Functional Partners:
PHYPA_005072
Uncharacterized protein.
    
 0.776
PHYPA_020862
ERCC4 domain-containing protein.
    
 0.684
PHYPA_001637
WD_REPEATS_REGION domain-containing protein.
   
 
 0.608
PHYPA_007572
Uncharacterized protein.
   
 
 0.590
PHYPA_015684
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
     
 0.553
PHYPA_020528
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
   
   0.552
PHYPA_009178
Uncharacterized protein; Belongs to the complex I LYR family.
    
   0.542
PHYPA_013211
Uncharacterized protein.
    
   0.541
PHYPA_020448
PPR_long domain-containing protein.
    
   0.537
PHYPA_007143
Uncharacterized protein.
    
   0.537
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.