STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_021380Uncharacterized protein. (594 aa)    
Predicted Functional Partners:
PHYPA_024376
Uncharacterized protein.
    
   0.869
PHYPA_023165
Predicted protein.
    
   0.869
PHYPA_027011
Predicted protein.
    
   0.869
PHYPA_026090
Uncharacterized protein; Belongs to the peptidase C1 family.
    
   0.845
PHYPA_023004
Predicted protein; Belongs to the peptidase C1 family.
    
   0.845
PHYPA_028362
Predicted protein; Belongs to the peptidase C1 family.
    
   0.845
PHYPA_011848
Predicted protein; Belongs to the peptidase C1 family.
    
   0.845
PHYPA_023796
Predicted protein; Belongs to the peptidase C1 family.
    
   0.845
PHYPA_021683
Predicted protein.
    
   0.569
PHYPA_020414
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.541
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.