STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020031PPIase cyclophilin-type domain-containing protein. (247 aa)    
Predicted Functional Partners:
PHYPA_008445
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.985
PHYPA_006189
Nbs1.
    
 0.979
PHYPA_013382
Rad50.
   
 0.976
PHYPA_028535
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.975
PHYPA_024396
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 0.975
PHYPA_015684
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.975
PHYPA_021151
Uncharacterized protein.
    
 0.973
PHYPA_022832
SAP domain-containing protein.
    
 0.963
PHYPA_011520
Uncharacterized protein.
   
 0.955
PHYPA_021998
Uncharacterized protein.
   
 0.951
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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