STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_020201TPT domain-containing protein. (385 aa)    
Predicted Functional Partners:
cslC4
Cellulose synthase-like C4, glycosyltransferase family 2.
    
 
 0.855
PHYPA_005042
Predicted protein.
      
 0.537
PHYPA_020508
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
   
  
 0.528
PHYPA_008945
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
   
  
 0.528
PHYPA_022568
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
      
 0.455
PHYPA_018994
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
      
 0.455
PHYPA_002821
Uncharacterized protein; Belongs to the RNase T2 family.
      
 0.430
PHYPA_001008
Uncharacterized protein; Belongs to the RNase T2 family.
      
 0.430
PHYPA_003523
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.422
PHYPA_000280
Hexosyltransferase; Belongs to the glycosyltransferase 8 family.
      
 0.422
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.