STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_017882Uncharacterized protein. (2056 aa)    
Predicted Functional Partners:
PHYPA_030778
TAF domain-containing protein.
    
 0.990
PHYPA_023758
TFIID_20kDa domain-containing protein.
    
 0.990
PHYPA_024340
Uncharacterized protein.
    
 0.990
PHYPA_019075
TAFII28 domain-containing protein.
    
 0.990
PHYPA_006010
Uncharacterized protein.
    
 0.990
PHYPA_009015
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 0.990
PHYPA_026247
Peptidase_M1 domain-containing protein.
   
 0.988
PHYPA_022785
Peptidase_M1 domain-containing protein.
   
 0.988
PHYPA_018686
TAFII55_N domain-containing protein.
    
 0.986
PHYPA_001934
TAFII55_N domain-containing protein.
    
 0.986
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.