STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_018606Uncharacterized protein. (1155 aa)    
Predicted Functional Partners:
PHYPA_002660
Bms1-type G domain-containing protein.
   
 
 0.985
PHYPA_010191
Predicted protein.
   
 
 0.961
PHYPA_030163
Uncharacterized protein.
   
   0.949
PHYPA_009917
Predicted protein.
   
   0.946
PHYPA_028823
WD_REPEATS_REGION domain-containing protein.
   
   0.943
PHYPA_017099
S4 RNA-binding domain-containing protein.
   
 
 0.941
PHYPA_012610
CBF domain-containing protein.
   
   0.941
PHYPA_001988
KH domain-containing protein.
   
   0.939
PHYPA_017716
Sas10 domain-containing protein.
   
   0.934
PHYPA_030237
WD_REPEATS_REGION domain-containing protein.
   
   0.932
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.