PHYPA_017699 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYPA_017699

Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family. (332 aa)

Predicted Functional Partners:

PHYPA_023922

0.999

PHYPA_024023

0.999

PHYPA_020474

0.999

PHYPA_016624

0.999

PHYPA_000880

0.999

PHYPA_029498

0.998

PHYPA_026513

0.990

PHYPA_023024

0.990

PHYPA_011669

0.957

PHYPA_018053

0.935

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_000880	PHYPA_011669	A9S2M5	A0A2K1K7L5	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Uncharacterized protein.	0.971
PHYPA_000880	PHYPA_016624	A9S2M5	A0A2K1JRT3	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.	0.999
PHYPA_000880	PHYPA_017699	A9S2M5	A0A2K1JMV0	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.	0.999
PHYPA_000880	PHYPA_018053	A9S2M5	A0A2K1JGG8	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Uncharacterized protein.	0.615
PHYPA_000880	PHYPA_020474	A9S2M5	A0A2K1J762	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Histidinol dehydrogenase, chloroplastic; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.989
PHYPA_000880	PHYPA_023024	A9S2M5	A9RE17	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Predicted protein.	0.989
PHYPA_000880	PHYPA_023922	A9S2M5	A0A2K1IXU7	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Aminotran_1_2 domain-containing protein.	0.999
PHYPA_000880	PHYPA_024023	A9S2M5	A0A2K1IY57	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	PRA-CH domain-containing protein.	0.999
PHYPA_000880	PHYPA_026513	A9S2M5	A0A2K1ILP3	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Uncharacterized protein.	0.989
PHYPA_000880	PHYPA_029498	A9S2M5	A0A2K1IDJ9	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	Uncharacterized protein; Belongs to the histidinol dehydrogenase family.	0.988
PHYPA_011669	PHYPA_000880	A0A2K1K7L5	A9S2M5	Uncharacterized protein.	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	0.971
PHYPA_011669	PHYPA_016624	A0A2K1K7L5	A0A2K1JRT3	Uncharacterized protein.	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.	0.948
PHYPA_011669	PHYPA_017699	A0A2K1K7L5	A0A2K1JMV0	Uncharacterized protein.	Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.	0.957
PHYPA_011669	PHYPA_020474	A0A2K1K7L5	A0A2K1J762	Uncharacterized protein.	Histidinol dehydrogenase, chloroplastic; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.	0.862
PHYPA_011669	PHYPA_023024	A0A2K1K7L5	A9RE17	Uncharacterized protein.	Predicted protein.	0.752
PHYPA_011669	PHYPA_023922	A0A2K1K7L5	A0A2K1IXU7	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.930
PHYPA_011669	PHYPA_024023	A0A2K1K7L5	A0A2K1IY57	Uncharacterized protein.	PRA-CH domain-containing protein.	0.957
PHYPA_011669	PHYPA_026513	A0A2K1K7L5	A0A2K1ILP3	Uncharacterized protein.	Uncharacterized protein.	0.752
PHYPA_011669	PHYPA_029498	A0A2K1K7L5	A0A2K1IDJ9	Uncharacterized protein.	Uncharacterized protein; Belongs to the histidinol dehydrogenase family.	0.862
PHYPA_016624	PHYPA_000880	A0A2K1JRT3	A9S2M5	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase.	Imidazole glycerol phosphate synthase hisHF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The glutaminase domain produces the ammonia necessary for the cyclase domain to produce IGP and AICAR from PRFAR. The ammonia is channeled to the active site of the cyclase domain. In the C-terminal section; belongs to the HisA/HisF family.	0.999

page 1 of 6

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About