PHYPA_017768 protein (Physcomitrella patens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PHYPA_017768

Uncharacterized protein. (451 aa)

Predicted Functional Partners:

PHYPA_025689

0.990

PHYPA_023406

0.990

PHYPA_030345

0.990

PHYPA_011216

0.977

PHYPA_027834

0.977

PHYPA_028803

0.977

PHYPA_007367

0.961

PHYPA_022731

0.954

PHYPA_021906

0.954

PHYPA_027183

0.954

Your Current Organism:

Physcomitrella patens

NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PHYPA_007367	PHYPA_011216	A0A2K1KIT5	A0A2K1K6B5	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.871
PHYPA_007367	PHYPA_017768	A0A2K1KIT5	A0A2K1JNN6	Uncharacterized protein.	Uncharacterized protein.	0.961
PHYPA_007367	PHYPA_023406	A0A2K1KIT5	A9RWS2	Uncharacterized protein.	Predicted protein.	0.867
PHYPA_007367	PHYPA_025689	A0A2K1KIT5	A9RT52	Uncharacterized protein.	Predicted protein.	0.867
PHYPA_007367	PHYPA_027834	A0A2K1KIT5	A9RI39	Uncharacterized protein.	Predicted protein.	0.871
PHYPA_007367	PHYPA_028803	A0A2K1KIT5	A9SFD6	Uncharacterized protein.	Predicted protein.	0.871
PHYPA_007367	PHYPA_030345	A0A2K1KIT5	A9U0A5	Uncharacterized protein.	Predicted protein.	0.867
PHYPA_011216	PHYPA_007367	A0A2K1K6B5	A0A2K1KIT5	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.871
PHYPA_011216	PHYPA_017768	A0A2K1K6B5	A0A2K1JNN6	Hcy-binding domain-containing protein.	Uncharacterized protein.	0.977
PHYPA_011216	PHYPA_021906	A0A2K1K6B5	A0A2K1J3F3	Hcy-binding domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.877
PHYPA_011216	PHYPA_022731	A0A2K1K6B5	A0A2K1IZX4	Hcy-binding domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.877
PHYPA_011216	PHYPA_023406	A0A2K1K6B5	A9RWS2	Hcy-binding domain-containing protein.	Predicted protein.	0.983
PHYPA_011216	PHYPA_025689	A0A2K1K6B5	A9RT52	Hcy-binding domain-containing protein.	Predicted protein.	0.983
PHYPA_011216	PHYPA_027183	A0A2K1K6B5	A9SEU2	Hcy-binding domain-containing protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.877
PHYPA_011216	PHYPA_027834	A0A2K1K6B5	A9RI39	Hcy-binding domain-containing protein.	Predicted protein.	0.901
PHYPA_011216	PHYPA_028803	A0A2K1K6B5	A9SFD6	Hcy-binding domain-containing protein.	Predicted protein.	0.901
PHYPA_011216	PHYPA_030345	A0A2K1K6B5	A9U0A5	Hcy-binding domain-containing protein.	Predicted protein.	0.983
PHYPA_017768	PHYPA_007367	A0A2K1JNN6	A0A2K1KIT5	Uncharacterized protein.	Uncharacterized protein.	0.961
PHYPA_017768	PHYPA_011216	A0A2K1JNN6	A0A2K1K6B5	Uncharacterized protein.	Hcy-binding domain-containing protein.	0.977
PHYPA_017768	PHYPA_021906	A0A2K1JNN6	A0A2K1J3F3	Uncharacterized protein.	Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.954

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About