STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_016632Uncharacterized protein. (216 aa)    
Predicted Functional Partners:
PHYPA_005109
Uncharacterized protein.
    
0.987
PHYPA_003522
Uncharacterized protein.
    
 0.986
PHYPA_029043
BRO1 domain-containing protein.
    
 0.970
PHYPA_019771
Uncharacterized protein.
   
 0.970
PHYPA_019789
Uncharacterized protein.
   
 0.970
PHYPA_012946
Predicted protein.
   
 0.970
PHYPA_011557
Predicted protein.
    
 0.970
PHYPA_013845
Vacuolar protein sorting-associated protein; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.
    
 0.963
PHYPA_003693
Predicted protein; Belongs to the AAA ATPase family.
    
 0.957
PHYPA_000062
Predicted protein; Belongs to the AAA ATPase family.
    
 0.957
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.