STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_015403Uncharacterized protein. (1111 aa)    
Predicted Functional Partners:
PHYPA_009631
Predicted protein.
  
     0.498
PHYPA_007090
PlsC domain-containing protein.
  
     0.495
PHYPA_009629
Predicted protein.
  
     0.494
PHYPA_014292
Glycosyltransferase family 92 protein; Belongs to the glycosyltransferase 92 family.
  
     0.493
PHYPA_010107
PlsC domain-containing protein.
  
     0.493
PHYPA_024942
PlsC domain-containing protein.
  
     0.492
PHYPA_011896
Predicted protein.
  
     0.487
PHYPA_002865
Predicted protein.
  
     0.471
PHYPA_012168
U-box domain-containing protein.
  
     0.470
PHYPA_023179
U-box domain-containing protein.
  
     0.468
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.