STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_013459CNH domain-containing protein. (1015 aa)    
Predicted Functional Partners:
PHYPA_017586
Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.
   
 0.987
PHYPA_029627
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
   
 0.986
PHYPA_017853
Pep3_Vps18 domain-containing protein.
   
 0.985
PHYPA_019748
Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.
   
 0.974
PHYPA_021690
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.971
PHYPA_013043
Uncharacterized protein.
   
 0.961
PHYPA_021598
WD_REPEATS_REGION domain-containing protein.
   
 0.955
PHYPA_010637
WD_REPEATS_REGION domain-containing protein.
   
 0.955
PHYPA_020638
Uncharacterized protein.
    
 
 0.930
PHYPA_030820
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 
 0.890
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.