STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_013687TRANSKETOLASE_1 domain-containing protein. (748 aa)    
Predicted Functional Partners:
PHYPA_030230
Predicted protein.
 
 0.991
PHYPA_029151
Uncharacterized protein.
  
 0.987
PHYPA_019412
Predicted protein.
  
 0.987
PHYPA_030891
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.983
PHYPA_029468
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.983
PHYPA_007204
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.983
PHYPA_020553
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.983
PHYPA_007271
FBPase domain-containing protein.
  
 
 0.978
PHYPA_009322
Predicted protein.
  
 
 0.978
PHYPA_023099
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.976
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.