STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_012123Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (379 aa)    
Predicted Functional Partners:
PHYPA_004837
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.837
PHYPA_000312
Predicted protein.
  
 
 0.826
PHYPA_010871
Ribosomal_L18_c domain-containing protein.
  
 
 0.826
PHYPA_014671
Predicted protein.
  
 
 0.826
PHYPA_003495
Predicted protein.
  
 
 0.826
PHYPA_009791
Predicted protein.
   
 
 0.804
PHYPA_016074
Ribosomal_L2_C domain-containing protein.
  
 
 0.803
PHYPA_006126
Predicted protein.
  
 
 0.803
rpl2
50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.
  
 
 0.803
rpl2-2
Ribosomal protein L2.
  
 
 0.803
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.