STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_012531RING-CH-type domain-containing protein. (1172 aa)    
Predicted Functional Partners:
PHYPA_008868
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.901
PHYPA_019483
RING-CH-type domain-containing protein.
  
  
 
0.900
CPK13
Cpk13 calcium-dependent protein kinase.
      
 0.652
Arl1A1
Arl1-family small GTPase; Belongs to the small GTPase superfamily. Arf family.
   
  
 0.651
DELLAa
AtGAI1 GRAS E3 ubiquitin ligase protein.
      
 0.485
DELLAb
GAI1-like E3 ubiquitin ligase protein.
      
 0.485
PHYPA_031199
Ammonium transporter.
      
 0.463
PHYPA_025975
Ammonium transporter.
      
 0.463
PHYPA_009061
Ammonium transporter.
      
 0.463
PHYPA_007629
Ammonium transporter.
      
 0.463
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.