STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_012868Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (335 aa)    
Predicted Functional Partners:
PHYPA_019408
Uncharacterized protein.
   
 
 0.963
PHYPA_009011
Uncharacterized protein.
   
 
 0.963
PHYPA_007788
Uncharacterized protein.
   
 
 0.963
PHYPA_011649
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
     
 0.959
PHYPA_023240
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 
 0.955
PHYPA_013625
TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.
     
 0.904
PHYPA_012256
Uncharacterized protein.
      
 0.570
PHYPA_018532
Uncharacterized protein.
    
 0.569
PHYPA_017328
Uncharacterized protein.
      
 0.568
PHYPA_016725
Mg-por_mtran_C domain-containing protein.
      
 0.565
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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