STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_011108Uncharacterized protein. (109 aa)    
Predicted Functional Partners:
PHYPA_006179
Predicted protein.
   
 0.962
PHYPA_008868
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.940
PHYPA_020691
Uncharacterized protein.
   
 0.935
PHYPA_024260
Uncharacterized protein.
   
 0.931
PHYPA_015256
APC1_C domain-containing protein.
    
 0.925
PHYPA_022378
Uncharacterized protein.
   
 0.917
PHYPA_010016
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.917
PHYPA_015368
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.916
PHYPA_005309
ANAPC5 domain-containing protein.
    
 0.914
PHYPA_028652
BUB1 N-terminal domain-containing protein.
   
 0.893
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.