STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_011905Uncharacterized protein. (308 aa)    
Predicted Functional Partners:
PHYPA_004762
Predicted protein.
   
 
 0.977
PHYPA_004952
Ubiquitin-like domain-containing protein.
  
 0.974
PHYPA_029387
Predicted protein.
  
 
 0.974
rps12
Ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
  
 0.965
rps12-2
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
  
 0.965
PHYPA_011664
Predicted protein; Belongs to the universal ribosomal protein uS7 family.
  
 0.963
rps7
Ribosomal protein S7.
  
 0.963
rps7-2
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit.
  
 0.963
PHYPA_019347
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.957
PHYPA_003676
Uncharacterized protein.
  
 
 0.957
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (30%) [HD]