STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_009813Uncharacterized protein. (302 aa)    
Predicted Functional Partners:
PHYPA_002934
Uncharacterized protein.
    
  0.540
PHYPA_005204
Uncharacterized protein.
  
     0.537
PHYPA_026688
Uncharacterized protein.
    
 0.511
PHYPA_027256
Uncharacterized protein.
    
 0.506
PHYPA_023943
Uncharacterized protein.
    
 0.506
PHYPA_010952
Uncharacterized protein.
    
 0.506
PHYPA_016248
Uncharacterized protein.
  
     0.486
PHYPA_030425
Uncharacterized protein.
    
 0.464
PHYPA_017820
Uncharacterized protein.
   
 0.420
PHYPA_012727
SAM_MT_TRM5_TYW2 domain-containing protein.
    
  0.407
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.