STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_010145Uncharacterized protein. (370 aa)    
Predicted Functional Partners:
PHYPA_011753
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.544
PHYPA_029288
Predicted protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.544
PHYPA_029381
Uncharacterized protein.
   
 0.537
PHYPA_015310
Predicted protein; Belongs to the cullin family.
   
 0.537
PHYPA_020325
Predicted protein; Belongs to the cullin family.
   
 0.537
PHYPA_007671
Predicted protein; Belongs to the cullin family.
   
 0.537
PHYPA_008885
Predicted protein; Belongs to the cullin family.
   
 0.537
PHYPA_009989
Predicted protein; Belongs to the cullin family.
   
 0.537
PHYPA_004952
Ubiquitin-like domain-containing protein.
   
 
  0.509
PHYPA_021049
Predicted protein.
   
 
  0.470
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (18%) [HD]