STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_009060RelA_SpoT domain-containing protein. (640 aa)    
Predicted Functional Partners:
PHYPA_004762
Predicted protein.
   
 
 0.817
PHYPA_029387
Predicted protein.
    
   0.795
PHYPA_017069
Uncharacterized protein.
  
 
 0.657
PHYPA_006606
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.657
PHYPA_003808
Uncharacterized protein.
  
 
 0.657
PHYPA_024570
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.657
rpl20
50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.657
PHYPA_015695
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.649
PHYPA_012303
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.649
PHYPA_005841
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.649
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.