STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_007462Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (216 aa)    
Predicted Functional Partners:
PHYPA_014427
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.875
PHYPA_008476
AA_TRNA_LIGASE_II domain-containing protein.
  
  
 0.868
PHYPA_004047
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.826
PHYPA_000238
Predicted protein.
  
 
 0.826
PHYPA_016872
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.826
PHYPA_021705
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.769
PHYPA_024064
B5 domain-containing protein.
  
  
 0.768
PHYPA_027187
Predicted protein.
  
  
 0.768
PHYPA_007741
Uncharacterized protein.
  
  
 0.760
PHYPA_000391
Predicted protein.
  
 
 0.743
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.