STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_005820GMC_OxRdtase_N domain-containing protein. (490 aa)    
Predicted Functional Partners:
PHYPA_015832
Uncharacterized protein.
    
 0.961
PHYPA_001665
Uncharacterized protein.
    
 0.955
PHYPA_030425
Uncharacterized protein.
    
 0.951
ALDH7A
Antiquitin; Belongs to the aldehyde dehydrogenase family.
  
 
 0.949
PHYPA_024569
Uncharacterized protein.
    
 0.945
PHYPA_008027
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
  
 
 0.945
PHYPA_016257
Uncharacterized protein.
    
 0.942
PHYPA_025892
Uncharacterized protein.
    
 0.936
PHYPA_016032
WD_REPEATS_REGION domain-containing protein.
    
 0.936
PHYPA_012939
Uncharacterized protein.
    
 0.928
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.