STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHYPA_005909HNHc domain-containing protein. (314 aa)    
Predicted Functional Partners:
PHYPA_017622
Thymidylate_kin domain-containing protein.
     
 0.743
PHYPA_021448
dUTPase domain-containing protein.
    
  0.619
PHYPA_001054
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
  0.619
PHYPA_020999
Predicted protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
  0.619
PHYPA_013940
Predicted protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
  0.619
PHYPA_011513
Predicted protein.
  
  
 0.613
PHYPA_018859
DHFR domain-containing protein.
     
 0.598
PHYPA_015716
Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
  
 0.538
PHYPA_028535
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
     
 0.511
PHYPA_024396
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
     
 0.511
Your Current Organism:
Physcomitrella patens
NCBI taxonomy Id: 3218
Other names: P. patens, Physcomitrella patens (Hedw.) Bruch & Schimp., Physcomitrella patens subsp. patens, Physcomitrium patens, Physcomitrium patens (Hedw.) Mitt.
Server load: low (28%) [HD]